Papers

 

2010

 

48. Soufi, B., Kumar, C., Gnad, F., Mann, M., Mijakovic, I., Macek, B. Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) applied to quantitative proteomics of Bacillus subtilis. J Prot Res 2010 May 28 [Epub ahead of print]   

 

47. Jers C, Pedersen MM, Paspaliari DK, Schütz W, Johnsson C, Soufi B, Macek B, Jensen PR, Mijakovic I. Bacillus subtilis BY-kinase PtkA controls enzyme activity and localisation of its protein substrates. Mol Microbiol. 2010 May 24 [Epub ahead of print]

 

46. Jung S, Fladerer C, Braendle F, Madlung J, Spring O, Nordheim A. Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR. Proteome Sci. 2010 May 10;8(1):24. [Epub ahead of print] Free Article

45. Bertsch A, Jung S, Zerck A, Pfeifer N, Nahnsen S, Henneges C, Nordheim A, Kohlbacher O. Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics. J Proteome Res. 2010 May 7;9(5):2696-704.

 

44. Ma W, Muthreich N, Liao C, Franz-Wachtel M, Schütz W, Zhang F, Hochholdinger F, Li C. The mucilage proteome of maize (Zea mays L.) primary roots.

J Proteome Res. 2010 Apr 21 [Epub ahead of print]

 

43. Alsheimer M, Baier A, Schramm S, Schütz W, Benavente R. Synaptonemal Complex Protein SYCP3 exists in two isoforms showing different Conservation in Mammalian Evolution. Cytogenet. Genome Res. 2010 Mar 25 [Epub ahead of print]

 

42. Borchert N, Dieterich C, Krug K, Schütz W, Jung S, Nordheim A, Sommer RJ, Macek B. Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models. Genome Res. 2010 Mar 17. [Epub ahead of print]

 

41.   Saleem M, Lamkemeyer T, Schützenmeister A, Madlung J, Sakai H, Piepho HP, Nordheim A, Hochholdinger F. Specification of cortical parenchyma and stele of maize primary roots by asymmetric levels of auxin, cytokinin, and cytokinin-regulated proteins. Plant Physiol. 2010;152(1):4-18.

 

2009

 

40.   Muthreich N., Schützenmeister A., Schütz W., Madlung J., Krug K., Nordheim A., Piepho H.-P., Hochholdinger F. (2009): Regulation of the maize (Zea mays L.) embryo proteome by RTCS which controls seminal root initiation. Eur. J. Cell Biol, in press.

39.   Liu Y., von BehrensI., Muthreich N., Schütz W., Nordheim A., Hochholdinger F. (2009): Regulation of the pericycle proteome in maize (Zea mays L.) primary roots by RUM1 which is required for lateral root initiation. Eur. J. Cell Biol, in press.

38.   Henneges C, Hinselmann G, Jung S, Madlung J, Schütz W, Nordheim A, Zell A. Ranking Methods for the Prediction of Frequent Top Scoring Peptides from Proteomics Data. J Proteomics Bioinformatics. 2009; 2: 226-235

37.   Gröbner S, Linke D, Schütz W, Fladerer C, Madlung J, Autenrieth IB, Witte W, Pfeifer Y. Emergence of carbapenem-non-susceptible extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tübingen, Germany. J Med Microbiol. 2009;58(Pt 7):912-22.

36.   Biswas L, Biswas R, Nerz C, Ohlsen K, Schlag M, Schäfer T, Lamkemeyer T, Ziebandt AK, Hantke K, Rosenstein R, Götz F. Role of the twin-arginine translocation pathway in Staphylococcus. J Bacteriol. 2009;191(19):5921-9.

35.   Saleem M, Lamkemeyer T, Schützenmeister A, Fladerer C, Piepho HP, Nordheim A, Hochholdinger F. Tissue specific control of the maize (Zea mays L.) embryo, cortical parenchyma, and stele proteomes by RUM1 which regulates seminal and lateral root initiation. J Proteome Res. 2009 May;8(5):2285-97.

34.   Sprossmann F, Pankert P, Sausbier U, Wirth A, Zhou XB, Madlung J,Zhao H, Bucurenciu I, Jakob A, Lamkemeyer T, Neuhuber W, Offermanns S, Shipston MJ, Korth M, Nordheim A, Ruth P, Sausbier M. Inducible knockout mutagenesis reveals compensatory mechanisms elicited by constitutive BK channel deficiency in overactive murine bladder. FEBS J. 2009;276(6):1680-97

 

33.   Pirow R, Buchen I, Richter M, Allmer C, Nunes F, Günsel A, Heikens W, Lamkemeyer T, von Reumont BM, Hetz SK. Cationic composition and acid-base state of the extracellular fluid, and specific buffer value of hemoglobin from the branchiopod crustacean Triops cancriformis. J Comp Physiol B. 2009 Apr;179(3):369-81.

32. Zhang F, Skoda MWA, Jacobs RMJ, Dressen DG, Martin RA, Martin CM, Clark GF, Lamkemeyer T, Schreiber F. Gold Nanoparticles Decorated with Oligo(ethylene glycol) Thiols: Enhanced Hofmeister Effects in Colloid-Protein Mixtures. J Phys. Chem. C 2009; 113(12):4839-4847

31. Barjaktorovic Z, Babbick M, Nordheim A, Lamkemeyer T, Magel E, Hampp R. Alterations in Protein Expression of Arabidopsis thaliana Cell Cultures During Hyper- and Simulated Micro-Gravity. Microgravity Science and Technology. 2009; 21(1-2): 191-196

 

2008

 

30. Eisenbeis S, Lohmiller S, Valdebenito M, Leicht S and Braun V (2008) NagA-dependent uptake of N-Acetyl-gGlucosamine and N-Acetyl-Chitin Oligosaccharides across the Outer Membrane of Caulobacter crescentus. Journal of Bacteriology, 190 (15): 5230-5238.

29. Meyer VS, Kastenmuller W, Gasteiger G, Franz-Wachtel M, Lamkemeyer T, Rammensee HG, Stevanovic S, Sigurdardottir D and Drexle I (2008) Long-term immunity against actual poxviral HLA ligands as identified by differential stable isotope labeling. J Immunol, 181 (9): 6371-83

28. Hala M, Cole R, Synek L, Drdova E, Pecenkova T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler J and Zarsky V (2008) An exocyst complex functions in plant cell growth. Plant Cell, 20(5): 1330-45

27. Siemoneit U, Hofmann B, Kather N, Lamkemeyer T, Madlung J, Franke L, Schneider G, Jauch J, Poeckel D and Werz O (2008) Identification and functional analysis of cyclooxygenase-1 as a molecular target of boswellic acids. Biochem Pharmacol, 75 (2): 503-513.

26. Duechting A, Tschöpe C, Kaiser H, Lamkemeyer T, Tanaka N Aberle S, Lang F, Torresi J, Kandolf R and Bock CT (2008) Human parvovirus B19-NS1 protein modulates inflammatory signaling by activation of STAT3/PIAS3 in human endothelial cells J Virol, 82(16): 7942-52

25. Hoecker N, Lamkemeyer T, Keller B, Fladerer C, Madlung J, Piepho HP, Nordheim A and Hochholdinger F (2008) Analysis of non-additive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics, 8(16): 3882-94.

 

2007

 

24. Barjaktarović Z, Nordheim A, Lamkemeyer T, Fladerer C, Madlung J and Hampp R (2007) Time-course of changes in amounts of specific proteins upon exposure to hyper-g, 2-D clinorotation, and 3-D random positioning of Arabidopsis cell cultures. Journal of Experimental Botany, 58 (15/16): 4357-63.

23. Dembinsky D, Woll K, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim A, Nettleton D, Schnable PS, Hochholdinger F (2007) Transcriptomic and proteomic analyses of pericycle cells of the maize (Zea mays L.) primary root. Plant Physiol, 145: 575-588.

22. del Val C, Ernst P, Falkenhahn M, Fladerer C, Glatting KH, Suhai S (2007) ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. Nucleic Acids Res, 35: W444-W450.

21. Weinzierl AO, Lemmel C, Schoor O, Müller M, Krüger T, Wernet D, Hennenlotter J, Stenzl A, Klingel K, Rammensee HG and Stevanović S (2007) Distorted relation between mRNA copy number and corresponding major histocompatibility complex ligand density on the cell surface. Mol Cell Proteomics, 6: 102-13.

 

2006

 

20. Dengjel J, Nastke MD, Gouttefangeas C, Gitsioudis G, Schoor O, Altenberend F, Müller M, Krämer B, Missiou A, Sauter M, Hennenlotter J, Wernet D, Stenzl A, Rammensee HG, Klingel K and Stevanović S (2006) Unexpected Abundance of HLA Class II Presented Peptides in Primary Renal Cell Carcinomas. Clin Cancer Res, 12: 4163-4170.

19. Proikas-Cezanne T, Gaugel A, Frickey T and Nordheim A (2006) Rab14 is part of the early endosomal clathrin-coated TGN microdomain. FEBS Lett., 580: 5241-5246.

18. Rönnefarth VM, Erbacher AIM, Lamkemeyer T, Madlung J, Nordheim A, Rammensee HG and Decker P (2006) TLR2/TLR4-independent neutrophil activation and recruitment upon endocytosis of nucleosomes reveals a new pathway of innate immunity in systemic lupus erythematosus. J Immunol, 177: 7740-7749.

17. Crisóstomo MI, Vollmer W, Kharat A, Inhülsen S, Gehre F, Buckenmaier S and Tomasz A (2006) Attenuation of penicillin resistance in a peptidoglycan O-acetyl transferase mutant of Streptococcus pneumoniae. Mol Microbiol, published online.

16. Berg CP, Stein GM, Klein R, Pascu M, Berg T, Kammer W, Priemer M, Nordheim A, Gregor M, Berg PA and Wesselborg S (2006) Demonstration of PDC-E1 subunits as major antigens in the complement fixing fraction M4 and re-evaluation of PDC-E1-specific antibodies in PBC patients. Liver Int, 26: 846-855.

15. Sauer M, Jakob A, Nordheim A and Hochholdinger F (2006) Proteomic analysis of shoot-borne root initiation in maize (Zea mays L.). Proteomics, 6: 2530-2541.

14. Rousselot M, Jaenicke E, Lamkemeyer T, Harris RJ, and Pirow R (2006) Native and subunit molecular mass and quarternary structure of the haemoglobin from the primitive branchiopod crustacean Triops cancriformis. FEBS J, 273: 4055-4071.

13. Liu Y, Lamkemeyer T, Jakob A, Mi G, Zhang F, Nordheim A, and Hochholdinger F (2006) Comparative proteome analyses of maize (Zea mays L.) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1. Proteomics, 6: 4300-4308.

12. Lamkemeyer T, Zeis B, Decker H, Jaenicke E, Waschbüsch D, Gebauer W, Markl J, Meissner U, Rousselot M, Zal F and Paul RJ (2006) Molecular mass of macromolecules and subunits and quaternary structure of hemoglobin from the microcrustacean Daphnia magna. FEBS J, 273: 3393-3410.

11. Mordmüller B, Fendel R, Kreidenweiss A, Gille C, Hurwitz R, Metzger WG, Kun JFJ, Lamkemeyer T, Nordheim A, and Kremsner PG (2006) Plasmodia express two threonine-peptidase complexes during asexual development. Mol Biochem Parasitol, 148: 79-85. 

10. Neubauer H, Clare SE, Kurek R, Fehm T, Wallwiener D, Sotlar K, Nordheim A, Wozny W, Schwall GP, Poznanović S, Sastri C, Hunzinger C, Stegmann W, Schrattenholz A and Cahill MA (2006) Breast cancer proteomics by laser capture microdissection, sample pooling, 54-cm IPG IEF, and differential iodine radioisotope detection. Electrophoresis, 27: 1840-1852.

9. Zimmermann U, Junker H, Krämer F, Balabanov S, Kleist B, Kammer W, Nordheim A and Walther R (2006) Comparative proteomic analysis of neoplastic and non-neoplastic germ cell tissue. Biol Chem, 387: 437-440.

8. Resch A, Leicht S, Saric M, Pasztor L, Jakob A, Götz F, and Nordheim A (2006) Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling. Proteomics, 6: 1867-1877. 

7. Tolson JP, Flad T, Gnau V, Dihazi H, Hennenlotter J, Beck A, Mueller GA, Kuczyk M, and Mueller CA. (2006). Differential detection of S100A8 in transitional cell carcinoma of the bladder by pair wise tissue proteomic and immunohistochemical analysis. Proteomics, 6: 697-708. 

 

2005 

 

 6. Lamkemeyer T, Paul RJ, Stöcker W, Yiallouros I and Zeis B (2005) Macromolecular isoforms of Daphnia magna haemoglobin. Biol Chem, 386: 1087-1096.

5. Neugebauer H, Herrmann C, Kammer W, Schwarz G, Nordheim A, and Braun V (2005) ExbBD-dependent transport of maltodextrins through the novel MalA protein across the outer membrane of Caulobacter crescentus. J Bacteriol, 187: 8300-11. 

4. Hennersdorf F, Florian S, Jakob A, Baumgartner K, Sonneck K, Nordheim A, Biedermann T, Valent P, and Bühring HJ. (2005) Identification of CD13, CD107a, and CD164 as novel basophil-activation markers and dissection of two response patterns in time kinetics of IgE-dependent upregulation, Cell Res, 15: 325 - 335.

3. Hoschle B, Gnau V, and Jendrossek D. (2005). Methylcrotonyl-CoA and geranyl-CoA carboxylases are involved in leucine/isovalerate utilization (Liu) and acyclic terpene utilization (Atu), and are encoded by liuB/liuD and atuC/atuF, in Pseudomonas aeruginosa. Microbiology, 151: 3649-56.

2. Bera A, Herbert S, Jakob A, Vollmer W and Götz F (2005). Why are pathogenic staphylococci so lysozyme resistant? The peptidoglycan O-acetyltransferase OatA is the major determinant for lysozyme resistance of Staphylococcus aureus. Mol Microbiol, 55: 778-787.

 

2004

1. Proikas-Cezanne T, Waddell S, Gaugel A, Frickey T, Lupas A, and Nordheim A (2004). WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene, 23: 9314-9325.

 

 

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